Population genetic structure and marker-trait associations in East and West African Striga hermonthica with varying phenotypic response to Fusarium oxysporum f. sp. strigae isolates Foxy-2 and FK3.

To examine the genetic basis for the variable susceptibility of Striga hermonthica from differing zones of sub-Saharan Africa to Fusarium oxysporum f. sp. strigae (Fos) isolates Foxy-2 and FK3, 10 S. hermonthica populations from Eastern and Western Africa were phenotyped for their susceptibility response to Foxy-2 and FK3, and then genotyped with 22 simple sequence repeat (SSR) markers. There is low genetic differentiation between East African and West African S. hermonthica populations (i.e. the proportion of the total genetic variance contained in the subpopulation relative to the total genetic variance, FST  = 0.012, P < 0.05), but intermediate genetic differentiation (FST  = 0.143, P < 0.01) underlies the S. hermonthica groups that are differentiated by their phenotypic responses to Fos isolates. An expressed sequence tag SSR (EST-SSR) marker Y53 (P < 0.01) and a genomic SSR marker E1009 (P < 0.05) were associated with the S. hermonthica class susceptible to Foxy-2 and FK3 (group A). A divergent S. hermonthica class, consisting of groups with intermediate susceptibility to Foxy-2 (group B) and susceptibility to either FK3 (group C) or Foxy-2 (group D), showed no marker-trait association, instead demonstrated linkage disequilibrium decay. Owing to point substitutions and insertion-deletion mutations, the unique, protein-coding nucleotide sequence at the E1009 locus in group A was partly dissimilar to group B, but was totally distinct from groups C and D. These findings implied that the inconsistent effectiveness of a Fos isolate is better explained by genomic variation in S. hermonthica, rather than by S. hermonthica sampling zones.

Management of Striga hermonthica on sorghum (Sorghum bicolor) using arbuscular mycorrhizal fungi (Glomus mosae) and NPK fertilizer levels.

Trials were conducted in the screen house of Niger State College of Agriculture, Mokwa (09 degrees 18'N; 05 degrees 04'E) in the Southern Guinea Savannah agro-ecological zone of Nigeria during October-December, 2008 and January-March, 2009. The objective was to evaluate the effect of management of Striga hermonthica on sorghum (Sorghum bicolor) using Arbuscular mycorrhizal fungi and NPK fertilizer levels. The trials were laid out in split-split plot arrangement in a randomized complete block design. The main-plot treatments consisted of three sorghum varieties; SAMSORG 3, ICSVIII and SAMSORG 14 while the sub-plot treatments consisted of inoculations; Striga mixed with Glomus, Striga only and Glomus only as well as no inoculation control. The sub-sub-plot treatments were made up of NPK fertilizer levels; (100 kg N, 50 kg P2O5, 50 kg K2O ha(-1)), (50 kg N, 50 kg P2O5, 50 kg K2O ha(-1)) and (0 kg N, 0 kg P2O5, 0 kg K2O ha(-1)). The result obtained showed that sorghum variety SAMSORG 3 were taller, having more vigour and lower reaction to Striga parasitism which resulted in the crop producing higher dry matter compared to the other two varieties. The plots inoculated with Striga only supported shorter plants of sorghum varieties, higher vigour and lower reaction score to Striga compared to Striga mixed with Glomus. It is obvious in this study that the crop performance increases with increase in the rates of NPK fertilizer applied.

Pathogenicity of Fusarium isolates to Striga hermonthica in Burkina Faso.

Striga hermonthica (Del.) Benth. is an important constraint to cereal crop production in Burkina Faso, of which sorghum (Sorghum bicolor L. Moench) is the most important component. Native Fusarium species to use as bio-control agents to S. hermonthica has been investigated. Fifty one Fusarium isolates obtained from diseased plants of S. hermonthica were evaluated for their pathogenicity against Striga under controlled environmental conditions. Of 51 Fusarium isolates, 14 were pathogenic to S. hermonthica but their virulence differed. These 14 isolates were evaluated for their effects on Striga seed germination in the laboratory and their ability to kill emerged Striga plants growing in greenhouse pots. Spores of Fusarium sp. isolates 150a-M, 125b-Za, 6-Fa, Fusarium equiseti isolates 5-Kou, 31-Kom, 32-Or, 13-Ba and Fusarium oxysporum isolate 34-Fo reduced Striga germination by 78 to 96% compared to the untreated control. The study showed that at the rate of 33 mg mL(-1), metabolites of Fusarium sp. isolates 125b-Za, 6-Fa, F. equiseti 5-Kou and F. oxysporum 34-Fo prevented Striga seed germination. In addition to these four isolates, Fusarium sp. isolates 141b-O, 150a-M and F. equiseti isolate 32-Or were effective at 67 mg mL(-1). Percentage of Striga mortality ranged from 17-37% between 14 and 28 days after inoculation with spores of F. oxysporum 34-Fo and F. equiseti 5-Kou. Striga dry biomass was reduced by 84 and 78% for the respective isolates compared to the untreated control with Striga. Sorghum yield was improved by 84 and 99% with Fusarium sp. 6-Fa and F. oxysporum 34-Fo, respectively, compared to the control without Striga. The use of Fusarium spores and metabolites against Striga offers different possibilities of bio-herbicides formulation that can be combined with other controls methods in the integrated Striga management. Further studies will be carried out under field conditions to assess the efficacy and safety of these Fusarium isolates to environment and humans and evaluate low cost strategies for transfer to subsistence farmers.

Cloning and characterisation of a maize carotenoid cleavage dioxygenase (ZmCCD1) and its involvement in the biosynthesis of apocarotenoids with various roles in mutualistic and parasitic interactions.

Colonisation of maize roots by arbuscular mycorrhizal (AM) fungi leads to the accumulation of apocarotenoids (cyclohexenone and mycorradicin derivatives). Other root apocarotenoids (strigolactones) are involved in signalling during early steps of the AM symbiosis but also in stimulation of germination of parasitic plant seeds. Both apocarotenoid classes are predicted to originate from cleavage of a carotenoid substrate by a carotenoid cleavage dioxygenase (CCD), but the precursors and cleavage enzymes are unknown. A Zea mays CCD (ZmCCD1) was cloned by RT-PCR and characterised by expression in carotenoid accumulating E. coli strains and analysis of cleavage products using GC-MS. ZmCCD1 efficiently cleaves carotenoids at the 9, 10 position and displays 78% amino acid identity to Arabidopsis thaliana CCD1 having similar properties. ZmCCD1 transcript levels were shown to be elevated upon root colonisation by AM fungi. Mycorrhization led to a decrease in seed germination of the parasitic plant Striga hermonthica as examined in a bioassay. ZmCCD1 is proposed to be involved in cyclohexenone and mycorradicin formation in mycorrhizal maize roots but not in strigolactone formation.

Arbuscular mycorrhizal fungi-parasite-host interaction for the control of Striga hermonthica (Del.) Benth. in sorghum [Sorghum bicolor (L.) Moench].

Five Glomus species (G. intraradices, G. albidum, G. mosseae, G. fasciculatum, and G. etunicatum) were compared against a check [without arbuscular mycorrhizal (AM) fungi, plus Striga] and control (without AM fungi or Striga) treatments for the control of Striga in a tolerant sorghum variety (War-wara bashi) in an experiment carried out in 12-cm-diameter clay pots. The experiment was carried out in a controlled growth chamber. G. mosseae significantly reduced the number of Striga emerging per plant, increased plant growth, shoot and total dry matter yield of sorghum, did not affect the root dry matter compared with the other AM fungi species, but had a comparable effect to the control treatment. All the AM fungi except G. mosseae, and also the Striga-infested treatment, increased the root:shoot ratio compared to the control treatment. The percent reduction (62%) of Striga emergence after G. mosseae inoculation resulted in about a 30% increase in total dry matter yield of sorghum over the control, while the total loss in dry matter yield of sorghum due to Striga infestation was 36%. Root colonization of sorghum by AM fungi was highest for G. mosseae (44%) followed by G. intraradices (24%) and G. albidum (23%) then G. fasciculatum (18%), with the lowest recorded for G. etunicatum (14%). No colonization of Striga roots was observed. The potential of AM fungi to reduce or to compensate for Striga infestation could be important for soil management, especially in the tropics, and for the reduction of Striga-resistant varieties of sorghum which are mycorrhiza-responsive.